• ``An optimization search algorithm for circuit inference based on DE models'',
  Ruye Wang, Eric Mjolsness (under review)
  Journal of Bioinformatics and Computational Biology
  

• ``Clustering analysis of microarray gene expression data by splitting algorithm'',
  Ruye Wang, Lucas Scharenbroich, Eric Mjolsness, Barbara Wold.
  Jounral of Parallel and Distributed Computing (special issue on high-performance computational biology). Vol. 63, Issues 7-8, 2003, pp 692-706.
  

• ``A hybrid learning network for shift, orientation, and scaling invariant pattern recognition'',
  Network: Computation in Neural Systems, 12, 2001, pp 493-512.
  (http://authors.elsevier.com/sd/article/S0743731503000856)
  

• ``A Hybrid Neural Network Algorithm for Invariant Recognition'',
  Neural Networks 14, 2001, pp 1061-1073.
  

• ``An optical coherence microscope for 3-dimensional imaging in developmental biology'',
  B.Hoeling, A.Fernandez, R.Haskell, W.Myers, D.Petersen, K.Ungersma, R.Wang, M.Williams, S.Fraser.
  Optics Express, 6, 2000, p.136,

• ``Optical coherence microscopy: a technology for rapid, in vivo, non-destructive visualization of plans and plant cells'',
  J.Hettinger, M.Mattozzi, W.Meyers, M.Williams, A.Reeves, R.Parsons, R.Haskell, D.Petersen, R.Wang, and J.Medford.
  Plant Physiology 123, 2000.

• ``A network model of motion processing in area MT of primates'',
  Journal of Computational Neuroscience, 4, 1997.

• ``A network model for the optic flow computation of the MST neurons'',
  Neural Networks Volume 9, Number 3, pp 411-426, 1996.

• ``A simple competitive account of some response properties of visual neurons in area MSTd'',
  Neural Computation, Volume 7, Number 2. March 1994.

• ``Interactive visualization and programming --- a 3D vector field visualization system'',
  Ruye Wang, Richard Madison, HMC '92,
  IEEE Trans. on Magnetics, Vol. 29, No. 2, March 1993.

• ``An Approach to the Design of a Tree Classifier -- Based on Splitting Algorithm'',
  International Remote Sensing Journal, 1986, Vol. 7.

• ``An Approach to the Design of a Tree Classifier -- Based on Hierarchical Clustering'',
  International Remote Sensing Journal, 1986, Vol. 7.